Software

MCMCstat

About MCMCstat is a popular Matlab toolbox for Bayesian parameter estimation in non-linear models using Markov chain Monte Carlo (MCMC)

DeepACSON

About Automated Segmentation of White Matter in 3D large Electron Microscopy data pipeline. Creators A. Abdollahzadeh, I. Belevich, E. Jokitalo,

Cell_counter

About A tool for automated counting of cells in Nissl stained sections. Creator Ali Abdollahzadeh

gACSON

About gACSON software is to visualize, segment, and analyze the morphology of neurons in three-dimensional electron microscopy images. Creators A.

HelTomo

About Helsinki Tomography Toolbox (HelTomo) is a MATLAB toolbox that has been primarily created for working with X-ray Computed Tomography

GDE-FEM 2.0

About GDE-FEM 2.0 code package simulates temporal evolution of aerosol size distributions by approximating condensation/evaporation, coagulation, formation, and removal processes.

OOEIT

About OOEIT (Object Oriented Electrical Impedance Tomography) is an open-source Matlab code package for computing electrical impedance tomography (EIT) simulations

ACSON

About Automated 3D Axonal Morphometry of WhiteMatter pipeline. Creators Abdollahzadeh, A., Belevich, I., Jokitalo, E., Tohka, J. & Sierra, A.